Package: DBHC 0.0.3

Gabriel Budel

DBHC: Sequence Clustering with Discrete-Output HMMs

Provides an implementation of a mixture of hidden Markov models (HMMs) for discrete sequence data in the Discrete Bayesian HMM Clustering (DBHC) algorithm. The DBHC algorithm is an HMM Clustering algorithm that finds a mixture of discrete-output HMMs while using heuristics based on Bayesian Information Criterion (BIC) to search for the optimal number of HMM states and the optimal number of clusters.

Authors:Gabriel Budel [aut, cre], Flavius Frasincar [aut]

DBHC_0.0.3.tar.gz
DBHC_0.0.3.zip(r-4.7)DBHC_0.0.3.zip(r-4.6)DBHC_0.0.3.zip(r-4.5)
DBHC_0.0.3.tgz(r-4.6-any)DBHC_0.0.3.tgz(r-4.5-any)
DBHC_0.0.3.tar.gz(r-4.7-any)DBHC_0.0.3.tar.gz(r-4.6-any)
DBHC_0.0.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
DBHC/json (API)
NEWS

# Install 'DBHC' in R:
install.packages('DBHC', repos = c('https://gabybudel.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/gabybudel/dbhc/issues

On CRAN:

Conda:

2.70 score 1 stars 4 scripts 132 downloads 13 exports 91 dependencies

Last updated from:b071dee901. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK304
source / vignettesOK201
linux-release-x86_64OK177
macos-release-arm64OK201
macos-oldrel-arm64OK255
windows-develOK127
windows-releaseOK137
windows-oldrelOK107
wasm-releaseOK121

Exports:assign.clusterscluster.biccount.parametersemission.heatmaphmm.clustmodel.llpartition.bicselect.seedsseq2hmm.llsize.searchsmooth.hmmsmooth.probabilitiestransition.heatmap

Dependencies:backportsbitbit64bootcheckmateclicliprclustercodetoolscollapsecolorspacecommonmarkcpp11crayoncurldata.tabledigestdplyrfarverforcatsfuturefuture.applygenericsggh4xggplot2ggrepelggseqplotggtextglobalsgluegridBasegridtextgtablehavenhmsigraphisobandjpeglabelinglatticelhslifecyclelistenvlitedownmagrittrmarkdownMASSMatrixmgcvnlmenloptrnumDerivparallellypatchworkpermutepillarpkgconfigplyrpngprettyunitsprogressprogressrpurrrR6rbibutilsRColorBrewerRcppRcppArmadilloRcppHungarianRdpackreadrreshape2rlangS7scalesseqHMMstringistringrtibbletidyrtidyselectTraMineRtzdbutf8vctrsveganviridisLitevroomwithrxfunxml2