Package: DBHC 0.0.3

Gabriel Budel
DBHC: Sequence Clustering with Discrete-Output HMMs
Provides an implementation of a mixture of hidden Markov models (HMMs) for discrete sequence data in the Discrete Bayesian HMM Clustering (DBHC) algorithm. The DBHC algorithm is an HMM Clustering algorithm that finds a mixture of discrete-output HMMs while using heuristics based on Bayesian Information Criterion (BIC) to search for the optimal number of HMM states and the optimal number of clusters.
Authors:
DBHC_0.0.3.tar.gz
DBHC_0.0.3.zip(r-4.7)DBHC_0.0.3.zip(r-4.6)DBHC_0.0.3.zip(r-4.5)
DBHC_0.0.3.tgz(r-4.6-any)DBHC_0.0.3.tgz(r-4.5-any)
DBHC_0.0.3.tar.gz(r-4.7-any)DBHC_0.0.3.tar.gz(r-4.6-any)
DBHC_0.0.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
DBHC/json (API)
NEWS
| # Install 'DBHC' in R: |
| install.packages('DBHC', repos = c('https://gabybudel.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/gabybudel/dbhc/issues
Last updated from:b071dee901. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 304 | ||
| source / vignettes | OK | 201 | ||
| linux-release-x86_64 | OK | 177 | ||
| macos-release-arm64 | OK | 201 | ||
| macos-oldrel-arm64 | OK | 255 | ||
| windows-devel | OK | 127 | ||
| windows-release | OK | 137 | ||
| windows-oldrel | OK | 107 | ||
| wasm-release | OK | 121 |
Exports:assign.clusterscluster.biccount.parametersemission.heatmaphmm.clustmodel.llpartition.bicselect.seedsseq2hmm.llsize.searchsmooth.hmmsmooth.probabilitiestransition.heatmap
Dependencies:backportsbitbit64bootcheckmateclicliprclustercodetoolscollapsecolorspacecommonmarkcpp11crayoncurldata.tabledigestdplyrfarverforcatsfuturefuture.applygenericsggh4xggplot2ggrepelggseqplotggtextglobalsgluegridBasegridtextgtablehavenhmsigraphisobandjpeglabelinglatticelhslifecyclelistenvlitedownmagrittrmarkdownMASSMatrixmgcvnlmenloptrnumDerivparallellypatchworkpermutepillarpkgconfigplyrpngprettyunitsprogressprogressrpurrrR6rbibutilsRColorBrewerRcppRcppArmadilloRcppHungarianRdpackreadrreshape2rlangS7scalesseqHMMstringistringrtibbletidyrtidyselectTraMineRtzdbutf8vctrsveganviridisLitevroomwithrxfunxml2
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Cluster Assignment | assign.clusters |
| HMM BIC | cluster.bic |
| Count HMM Parameters | count.parameters |
| Heatmap Emission Probabilities | emission.heatmap |
| DBHC Algorithm | hmm.clust |
| Get HMM Log Likelihood | model.ll |
| Partition BIC | partition.bic |
| Seed Selection Procedure | select.seeds |
| Sequence-to-HMM Likelihood | seq2hmm.ll |
| Size Search Algorithm | size.search |
| Smooth HMM Parameters | smooth.hmm |
| Smooth Probabilities | smooth.probabilities |
| Heatmap Transition Probabilities | transition.heatmap |